Publications:
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Harder T, Boomsma W, Paluszewski M, Frellsen J, Johansson KE, Hamelryck T
Beyond rotamers: a generative, probabilistic model of side chains in proteins
BMC Bioinformatics 2010, 11:306
[PMID: 20525384]
[pdf]
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Borg, M., Mardia, KV., Boomsma, W., Frellsen, J., Harder, T.,
Stovgaard, K., Ferkinghoff-Borg, J., Røgen, P., Hamelryck, T.
A probabilistic approach to protein structure prediction: PHAISTOS in CASP9.
LASR2009 - Statistical tools for challenges in bioinformatics. pp. 65-70.
Leeds, Leeds University Press.
[pdf]
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Boomsma, W., Borg, M., Frellsen, J., Harder, T., Stovgaard, K., Ferkinghoff-Borg, J.,
Krogh, A., Mardia, KV. and Hamelryck, T.
PHAISTOS: protein structure prediction using a probabilistic model of local structure.
Proceedings of CASP8, Cagliari, Sardinia, Italy, December 3-7 2008. pp 82-83.
[PDF]
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Diploma thesis
CyInteract - A Cytoscape Plug-In and Meta-Database for the Analysis of Protein-Protein Interaction Data
[not publicly available for legal objections]
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Friedberg I., Harder T., Kolodny R., Sitbon E., Li Z., Godzik A.
Using an alignment of fragment strings for comparing protein structures.
Bioinformatics (2006)
[PMID: 17237095]
[pdf]
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Friedberg I, Harder T, Godzik A.
JAFA: a protein function annotation meta-server.
Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W379-81.
[PMID: 16845030]
[Poster]
[pdf]
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